Browsing Faculty of Natural Sciences by Title
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Koen, Chris (Oxford University Press, 2005)[more][less]
Abstract: The results of more than 100 h of CCD photometric monitoring of 10 L dwarfs and two T dwarfs are presented. Reasonable evidence is shown for IC band variability in DENIS 0255−4700, DENIS 1705−0516 and 2M 2104−1037. Substantial brightening of the T dwarf binary Indi Bab was observed over the course of 3.6 h; it is unlikely that this could have been caused by surface spots. No unequivocal variability could be detected in the RC band. URI: http://hdl.handle.net/10566/805 Files in this item: 1
KoenUltracool2005.pdf (1.863Mb) -
Fielding, Burtram C.; Davison, Sean (Kluwer Academic Publishers, 2000)[more][less]
Abstract: The p10 gene was identified and characterized from the Trichoplusia ni single capsid nuclear polyhedrosis virus (TniSNPV). The p10 open reading frame (ORF) sequence was identified following sequencing of the ends of the EcoRI-G clone. Subsequent sequencing of an EcoRI-SmaI subclone identified the entire p10 and a portion of a p26 homologue. The p10 ORF of 264 basepairs (bps), encoded a predicted protein of 88 amino acids (aas) with Mr 9527 Da. The putative late transcription initiation motif (TAAG) was found upstream of the translation initiation codon at position ÿ46. Downstream of the translation stop codon, a putative poly(A) signal was identified. The p10 amino acid sequence contained the three conserved domains reported for all other p10 genes. The p10 amino acid sequence was most homologous (85% similarity and 67% identity) to that of Buzura suppresaria NPV p10 sequence. URI: http://hdl.handle.net/10566/767 Files in this item: 0
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Ngara, Rudo; Ndimba, Roya; Borch-Jensen, Jonas; Jensen, Ole Nørregaard; Ndimba, Bongani (Elsevier, 2012)[more][less]
Abstract: Sorghum bicolor, a drought tolerant cereal crop, is not only an important food source in the semi arid/arid regions but also a potential model for studying and gaining a better understanding of the molecular mechanisms of drought and salt stress tolerance in cereals. In this study, seeds of a sweet sorghumvariety, MN1618, were planted and grown on solid MS growth medium with or without 100mM NaCl. Heat shock protein expression immunoblotting assays demonstrated that this salt treatment induced stress within natural physiological parameters for our experimental material. 2D PAGE in combination with MS/MS proteomics techniques were used to separate, visualise and identify salinity stress responsive proteins in young sorghum leaves. Out of 281 Coomassie stainable spots, 118 showed statistically significant responses (p<0.05) to salt stress treatments. Of the 118 spots, 79 were selected for tandem mass spectrometric identification, owing to their good resolution and abundance levels, and of these, 55 were positively identified. Identified proteins were divided into six functional categories including both known and novel/putative stress responsive proteins. Molecular and physiological functions of some of our proteins of interest are currently under investigation via bioinformatic and molecular biology approaches. URI: http://hdl.handle.net/10566/543 Files in this item: 1
NdimbaSweetSorghum2012.pdf (765.8Kb) -
Wang, Weizhou; Leat, Neil; Fielding, Burtram C.; Davison, Sean (Springer Verlag, 2001)[more][less]
Abstract: Substantial research has been conducted on the immediate early 1 (ie-1) genes from the prototype baculovirus Autographa californica multicapsid nuclear polyhedrosis virus (AcMNPV) and the Orgyia pseudotsugata multicapsid nuclear polyhedrosis virus (OpMNPV). In both cases ie-1 gene products have been implicated in transcriptional activation and repression. In this study an ie-1 homolog was identified from Trichoplusia ni single nucleocapsid polyhedrosis virus (TniSNPV). Nucleotide sequence analysis indicated that the TniSNPV ie-1 gene consists of a 2217 nucleotide open reading frame (ORF), encoding a protein with a molecular mass of 84.464 kDa. This represents the largest baculovirus ie-1 gene characterised to date. Of the seven ie-1 homologs identified to date, the TniSNPV ie-1 shared most sequence similarity with the ie-1 gene of Spodoptera exigua MNPV (SeMNPV) (41%). At the nucleotide level, expected TATA and CAGT motifs were found to precede each ie-1 ORF. At the protein level, it was confirmed that the N-termini are poorly conserved, but share the characteristic of having a high proportion of acidic amino acids. In addition it was found that N-terminal regions significantly matched the SET domain in the Swiss-Prot prosite database. The C-terminal regions of the deduced IE-1 sequences were found to be substantially more conserved than the N-termini. Several conserved motifs were identified in the C-terminal sequences. A phylogenetic tree of nine baculovirus IE-1 proteins was constructed using maximum parsimony analysis. The phylogenetic estimation of the ie-1 genes shows that TniSNPV is a member of the previously described lepidopteran NPV group II and it is most closely related to SeMNPV. URI: http://hdl.handle.net/10566/881 Files in this item: 0
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Koen, Chris; Marang, F.; Kilkenny, David; Jacobs, C. (Oxford University Press, 2007)[more][less]
Abstract: Near-infrared photometry of 599 stars is used to calculate transformations from the South African Astronomical Observatory (SAAO) JHK system to the Two-Micron All-Sky Survey (2MASS) JHKS system. Both several-term formal regression relations and simplified transformations are presented. Inverse transformations (i.e. 2MASS to SAAO) are also given. The presence of non-linearities in some colour terms is highlighted. URI: http://hdl.handle.net/10566/888 Files in this item: 1
KoenSAAO-2MASS2007.pdf (526.2Kb) -
Musyoka, Nicholas; Petrik, Leslie; Hums, Eric; Baser, Hasan; Schwieger, Wilhelm (Elsevier, 2012)[more][less]
Abstract: In this study, high phase purity of zeolite A was prepared from coal fly ash precursors. The molar regime of both the clear solution extract and unseparated fly ash slurry was adjusted to achieve the right composition for zeolite A crystallization. The formation process for zeolite A from coal fly ash precursors was monitored in detail using an in situ ultrasonic system and was complemented by use of ex situ techniques such as XRD, FTIR, SEM and FTIR. The findings from both the in situ ultrasonic monitoring process and ex situ techniques clearly contributed significantly in unmasking the formation process of zeolite A from coal fly ash compared to previous studies reported in the literature. The study also enriches the existing body of literature by deeply investigating the gel–solution–crystal interactions starting from this complex feedstock. Comparable ultrasonic signals were generated when both clear and unseparated fly ash based precursor solutions were used during the zeolite synthesis process. URI: http://hdl.handle.net/10566/708 Files in this item: 1
MusyokaCoalFlyAsh2012.pdf (9.057Mb) -
Adesemowo, A. Kayode; Tucker, William D. (Telkom, 2004)[more][less]
Abstract: A text only Instant Messaging (IM) built on the IETF open standard SIP/SIMPLE has been developed in line with our proposed introduction of a user-defined text Hotkey feature. These act as an on-click Affective Gesture (AG): in similitude to Face-to-Face (F2F) expressive gesture-like abilities. Given that text communication possesses expressive discourse with some presence level, we seek to show that one-click text-gesture fast-tracking enhances text communication further. For this study, we are taking a hybrid quantitative and qualitative approach. Initial Pre-trial results have shown that an AG approach is more likely to improve IM chat spontaneity/response rate. Further experimental trials are being undertaken. Mobile devices and networks are becoming more data-centric (evident in Japanese I-mode) even as mobile network voice Average Revenue Per User (ARPU) are declining, new stream of data services are required which must take cognisance of handhelds features albeit their small screen estate and input/output limitation. Given that IM is entrenched in the social space, especially among teenagers and gaining wide adoption in the business place, we believe extensions are required for IM steep uptake in the mobile world, much as SMS has gained prominence. Enhanced input mechanisms for handheld IM system are expected to increase co-presence between handheld users and their desktop-based counterparts while in a synchronous discussion. URI: http://hdl.handle.net/10566/548 Files in this item: 1
AdesemowoTuckerInstantMessaging2004.pdf (165.2Kb) -
Adesemowo, A. Kayode; Tucker, William D. (SAICSIT in association with ACM, 2005)[more][less]
Abstract: Text communication can be perceived as lacking in chat spontaneity, or plastic, due to medium limitations during interaction. A form of text messaging, Instant Messaging (IM), is now on the uptake, even on mobile handhelds. This paper presents results of using affective gesture to rubberise IM chat in order to improve synchronous communication spontaneity. The experimental design makes use of a text-only IM tool, running on handhelds, built with the Session Initiation Protocol (SIP) and the SIP Instant Messaging and Presence Leveraging Extensions (SIMPLE). The tool was developed with a novel user-defined hotkey – a one-click context menu that fast-tracks the creation and transmission of text-gestures and emoticons. A hybrid quantitative and qualitative approach was taken in order to enable data triangulation. Data collected from user trials affirms that the affective gesture hotkey facility improves chat responsiveness, thus enhancing chat spontaneity. URI: http://hdl.handle.net/10566/464 Files in this item: 1
AdesemowoTuckerInstantMessaging2005.pdf (364.4Kb) -
Cowan, Donald A. (UWC, 2010)[more][less]
Abstract: The IMBM Brochure (2009) provides a summary of the staffing, activities and outputs of the Institute for the 2009 academic year Description: Institute for Microbial Biotechnology and Metagenomics brochure for 2009 URI: http://hdl.handle.net/10566/127 Files in this item: 1
IMBMbrochure2009.pdf (1.295Mb) -
Naidoo, Vaughn; Tucker, William D. (Telkom, 2000)[more][less]
Abstract: With QoS available on IP-dominant NGNs, Policy-based Network Management (PBNM) is an effective mechanism for managing services as opposed to actual devices. IP is ubiquitous, and any NGN must contend with legacy devices that do not support emerging PBNM protocols. This Work in Progress uses the common Internet notion of a proxy to enforce policies on legacy equipment. We use VoIP as a mechanism to test the validity of our intended solution. URI: http://hdl.handle.net/10566/449 Files in this item: 1
NaidooTuckerVoIP2000.pdf (53.16Kb) -
Kobo, Hlabishi Isaac; Tucker, William D.; Norman, Michael (Telkom, 2010)[more][less]
Abstract: This paper discusses a way of offering voice instant messaging based on Internet Protocol using Session Initiation Protocol. The purpose of this investigation is to enhance the modern social communication amongst the people of South Africa who are already accustomed to text-based instant messaging. The proposed application aims to implement the traditional Push-to-Talk technology using Internet Protocol. Thus the proposed IP-based Push-to-Talk is a new approach to voice communication which emulates a walkie-talkie system. On the mobile phone IP-Push-to-Talk herein referred to as Push-to-Talk over a cell phone can be viewed as a voice SMS. The adoption of a Push-to-Talk service was inspired by the fact that it applies half-duplex communication. This enhances the primary objective of offering a cheap voice instant messaging. In half-duplex communication, only one person can talk at a time, thereby avoiding bidirectional charging. The project was implemented on two platforms, a PC and a mobile phone. The PC Push-to-Talk was implemented through client server approach whilst the mobile Push-to-Talk through a peer-to-peer approach. Several software engineering strategies were used for user requirements gathering as well for testing. Six users participated in the test and the results were gathered through questionnaires. The results showed that, half-duplex communication is efficient and yet very economical as it makes less usage of system resources. URI: http://hdl.handle.net/10566/623 Files in this item: 1
KoboNormanTucker-SATNAC2010.pdf (532.1Kb) -
Jeffries, Michael; Tucker, William D. (Telkom, 2001)[more][less]
Abstract: The Session Initiation Protocol and H.323 dominate the Voice over IP world. These signaling protocols are responsible for call setup and call tear down by IP telephony solutions. This project analyses and discusses the underlying H.323 and SIP interoperability issues and intends to build a scalable solution for the interoperability of these protocols. The gateway maps the call sequences between the two protocols. A test scenario establishes a barrage of call setup and tear down requests to test the scalability of any H.323/SIP interoperability solution. URI: http://hdl.handle.net/10566/465 Files in this item: 1
JeffriesTuckerSIP2001.pdf (65.32Kb) -
Jeffries, Michael; Tucker, William D. (Telkom, 2000)[more][less]
Abstract: Current VoIP signaling protocols are interoperable with the PSTN SS7 via H.323-to-SS7 or SIP-to-SS7 gateways. As we move toward the Next Generation Network, the PSTN falls away and we work toward carrier-grade VoIP interoperability between H.323, SIP, and other future VoIP signaling protocols. This paper present a Work in Progress to design and implement a solution based on the Internet Protocol itself. URI: http://hdl.handle.net/10566/425 Files in this item: 1
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Vuza, Xolisa; Tucker, William D. (Telkom, 2004)[more][less]
Abstract: We intend adding video messaging and conferencing to Multimodal Telemedicine Intecommunicator (MuTI), a previous system that has already been in place in the target environment. This is to allow a semi-synchronous communication to occur over the Internet Protocol. Videoconferencing can be used to communicate synchronously and video messaging in a store and forward fashion can be used to communicate asynchronously. MuTI supports store and forward of still images, voicemail and text. The system also supports real time communication by means of audio. The aim of this research is to learn how to bridge the digital divide by building applications that are useful and relevant to the users we build for. We are developing this application together with the users of the application in an iterative fashion where we build the prototypes and show the users at each cycle. The feedback that we get from the users plays an important role in building a prototype for the next cycle. The software will be instrumented to provide statistics about the system usage. We are also going to get data from the users by using questionnaires and compare this data with the statistics about software usage to see how much the system has been used and which features in the system do the users like. We are using a rural South African context in conducting this research. We hope to bring about guidelines and recommendations on how to develop applications to bridge the digital divide in a developing world context. URI: http://hdl.handle.net/10566/435 Files in this item: 1
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Appunni, Sathiya Susuman; Hamisi, Hamisi F. (WB Saunders, 2013)[more][less]
Abstract: Introduction: This paper will focus on MDG4, which is concerned with reducing child mortality. Childhood mortality rates are the leading indicator of the level of child health and overall development of a country; and MDG4 aims to reduce the childhood mortality rate by two-thirds by 2015. The target is to reduce the number of children dying before 5 years of age from 93 per 1000 in 1990 to 31 per 1000 in 2015. Thus, MDG4 aims to reduce under-five mortality rates and infant mortality rates, which could be achieved by increasing the proportion of 12-month-old children who are immunized against measles, BCG, DPT, etc. URI: http://hdl.handle.net/10566/860 Files in this item: 0
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Koen, Chris; Lombard, Fred (Oxford University Press, 2009)[more][less]
Abstract: In a recent paper, Puech and co-workers compared K-band Tully–Fisher relations derived for nearby and distant galaxies, respectively. They concluded that the two relations differ, and deduced that there is evolution in the Tully–Fisher relations. The statistical comparison between the two regression lines is re-examined, and it is shown that the statistical test used gives non-significant results. It is argued that better results can be obtained by comparing the ‘inverse’ Tully–Fisher relations, and it is demonstrated by two different methods that the nearby- and distant-sample relations do indeed differ at a very high significance level. One of the statistical methods described is non-parametric, and can be applied very generally to compare linear regressions from two different samples. URI: http://hdl.handle.net/10566/809 Files in this item: 1
KoenTully-Fisher2009.pdf (1.127Mb) -
Koen, Chris; Tanabe, T.; Tamura, M.; Kusakabe, N. (Oxford University Press, 2005)[more][less]
Abstract: The M8.5 object SSSPM J0109−5101 has recently been shown to be both a periodic and a flaring variable, based on optical observations in the extreme red. More than 16 h of monitoring in the near-infrared (NIR) reported here failed to show any variability. Similarly, no NIR variability could be detected in intensive monitoring of three other suspected optical variables. This paper also reports on photometry of half a dozen targets monitored over a few weeks, and on the comparison of intensive monitoring at different epochs. In only one case, that of the T dwarf binary Indi Bab, is there good evidence for variability. Our results allow stringent limits to be placed on the NIR variability levels in a large sample of ultracool dwarfs. URI: http://hdl.handle.net/10566/794 Files in this item: 1
KoenPhotometric2005.pdf (1.088Mb) -
Koen, Chris (Oxford University Press, 2009)[more][less]
Abstract: JL 82 is a known binary, consisting of an sdB star and a companion which is not directly observable in the optical. Photometric measurements reported in this paper show it to variable with both the binary period (∼0.75 d), as well as on much shorter time-scales. The shorter periods are ascribed to pulsation of the sdB star, making it a member of the PG 1716 class of pulsating stars. URI: http://hdl.handle.net/10566/839 Files in this item: 1
KoenKL82_2009.pdf (750.7Kb) -
Yi, Long; Connan, James (Association for Computing Machinery, 2007)[more][less]
Abstract: Self-tuning has been an elusive goal for operating systems and is becoming a pressing issue for modern operating systems. Well-trained system administrators are able to tune an operating system to achieve better system performance for a specific system class. Unfortunately, the system class can change when the running applications change. Our model for self-tuning operating system is based on a monitor-classify-adjust loop. The idea of this loop is to continuously monitor certain performance metrics, and whenever these change, the system determines the new system class and dynamically adjusts tuning parameters for this new class. This paper describes KernTune, a prototype tool that identifies the system class and improves system performance automatically. A key aspect of KernTune is the notion of Artificial Intelligence (AI) oriented performance tuning. It uses a support vector machine (SVM) to identify the system class, and tunes the operating system for that specific system class. This paper presents design and implementation details for KernTune. It shows how KernTune identifies a system class and tunes the operating system for improved performance. URI: http://hdl.handle.net/10566/53 Files in this item: 1
Yi_KernTune(2007).pdf (262.3Kb) -
Yi, Long; Tucker, William D. (Telkom, 2008)[more][less]
Abstract: This paper describes Kiara, an open source SIPbased communication system that provides the building blocks to enable Deaf relay services. We have implemented a prototype that provides real-time text, voice and video to a variety of end user devices over a variety of networks. The work-in-progress concerns the addition of relay services for the Deaf. URI: http://hdl.handle.net/10566/523 Files in this item: 1
YiTuckerKiara2008.pdf (173.6Kb)